Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa (Record no. 44392)

MARC details
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fixed length control field 02469nam a2200397Ia 4500
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control field MX-MdCICY
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20250625140626.0
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Transcribing agency CICY
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) B-10153
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245 10 - TITLE STATEMENT
Title Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa
490 0# - SERIES STATEMENT
Volume/sequential designation Molecular Ecology, 15, p.1367-1378, 2006
520 3# - SUMMARY, ETC.
Summary, etc. Ecotilling was used as a simple nucleotide polymorphism (SNP)discovery tool to examine DNA variation in natural populations of the western black cottonwood, Populus trichocarpa , and was found to be more efficient than sequencing for large-scale studies of genetic variation in this tree. A publicly available, live reference collection of P. trichocarpa from the University of British Columbia Botanical Garden was used in this study to survey variation in nine different genes among individuals from 41 different populations. A large amount of genetic variation was detected, but the level of variation appears to be less than in the related species, Populus tremula , based on reported statistics for that tree. Genes examined varied considerably in their level of variation, from PoptrTB1 which had a single SNP, to PoptrLFY which had more than 23 in the 1000-bp region examined. Overall nucleotide diversity, measured as ð Total , was relatively low at 0.00184. Linkage disequilibrium, on the other hand, was higher than reported for some woody plant species, with mean r 2 equal to 0.34. This study reveals the potential of Ecotilling as a rapid genotype discovery method to explore and utilize the large pool of genetic variation in tree species.
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element LINKAGE DISEQUILIBRIUM
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element NATURAL VARIATION
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element NUCLEOTIDE DIVERSITY
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element POPULUS TRICHOCARPA
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element TILLING
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element TREE GENOMICS
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Gilchrist, E.J.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Haughn, G.W.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Ying, C.C.
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Personal name Otto, S.P.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Zhuang, J.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Cheung, D.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Hamberger, B.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Hamberger, B.
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Personal name Kalynyak, T.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Johnson, L.
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Personal name Bohlmann, J.
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Personal name Ellis, B.E.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Douglas, C.J.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Cronk, Q.C.B.
856 40 - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier <a href="https://drive.google.com/file/d/1ZjaHI6XhufZftVvNTttQJqJz2dk-HvGq/view?usp=drivesdk">https://drive.google.com/file/d/1ZjaHI6XhufZftVvNTttQJqJz2dk-HvGq/view?usp=drivesdk</a>
Public note Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx
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Source of classification or shelving scheme Clasificación local
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  Clasificación local     Ref1 CICY CICY Documento préstamo interbibliotecario 25.06.2025   B-10153 25.06.2025 25.06.2025 Documentos solicitados