Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCR-amplified 16S rRNA gene fragments: Do the different methods provide similar results? (Record no. 46494)

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fixed length control field 02283nam a2200349Ia 4500
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control field MX-MdCICY
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control field 20250625153850.0
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Transcribing agency CICY
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Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) B-12284
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Title Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCR-amplified 16S rRNA gene fragments: Do the different methods provide similar results?
490 0# - SERIES STATEMENT
Volume/sequential designation Journal of MicroBiological Methods, 69(3), p.470-479, 2007
520 3# - SUMMARY, ETC.
Summary, etc. Bacterial communities of four arable soils - pelosol, gley, para brown soil, and podsol brown soil - were analysed by fingerprinting of 16S rRNA gene fragments amplified from total DNA of four replicate samples for each soil type. Fingerprints were generated in parallel by denaturing gradient gel electrophoresis (DGGE), terminal restriction fragment length polymorphism (T-RFLP), and single strand conformation polymorphism (SSCP)to test whether these commonly applied techniques are interchangeable. PCR amplicons could be separated with all three methods resulting in complex ribotype patterns. Although the fragments amplified comprised different variable regions and lengths, DGGE, T-RFLP and SSCP analyses led to similar findings: (a)a clustering of fingerprints which correlated with soil physico-chemical properties, (b)little variability between the four replicates of the same soil, (c)the patterns of the two brown soils were more similar to each other than to those of the other two soils, and (d)the fingerprints of the different soil types revealed significant differences in a permutation test, which was recently developed for this purpose.
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element 16S RRNA GENE
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element DGGE
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element SOIL BACTERIAL DIVERSITY
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element SSCP
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element TOTAL COMMUNITY DNA
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element T-RFLP
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Smalla, K.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Oros-Sichler, M.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Milling, A.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Heuer, H.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Baumgarte, S.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Becker, R.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Neuber, G.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Neuber, G.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Ulrich, A.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Tebbe, C.C.
856 40 - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier <a href="https://drive.google.com/file/d/1nxTZaDuY5hvuOjFQLpBlHeFaif3XrsPQ/view?usp=drivesdk">https://drive.google.com/file/d/1nxTZaDuY5hvuOjFQLpBlHeFaif3XrsPQ/view?usp=drivesdk</a>
Public note Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx
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Source of classification or shelving scheme Clasificación local
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  Clasificación local     Ref1 CICY CICY Documento préstamo interbibliotecario 25.06.2025   B-12284 25.06.2025 25.06.2025 Documentos solicitados