A High-Throughput Data Mining of Single Nucleotide Polymorphisms in Coffea Species Expressed Sequence Tags Suggests Differential Homeologous Gene Expression in the Allotetraploid Coffea arabica1[W] (Record no. 46559)
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| fixed length control field | 02861nam a2200277Ia 4500 |
| 003 - CONTROL NUMBER IDENTIFIER | |
| control field | MX-MdCICY |
| 005 - DATE AND TIME OF LATEST TRANSACTION | |
| control field | 20250625153851.0 |
| 040 ## - CATALOGING SOURCE | |
| Transcribing agency | CICY |
| 090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN) | |
| Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) | B-12351 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION | |
| fixed length control field | 250602s9999 xx |||||s2 |||| ||und|d |
| 245 10 - TITLE STATEMENT | |
| Title | A High-Throughput Data Mining of Single Nucleotide Polymorphisms in Coffea Species Expressed Sequence Tags Suggests Differential Homeologous Gene Expression in the Allotetraploid Coffea arabica1[W] |
| 490 0# - SERIES STATEMENT | |
| Volume/sequential designation | Plant Physiology, 154(3), p.1053-1066, 2010 |
| 520 3# - SUMMARY, ETC. | |
| Summary, etc. | Polyploidization constitutes a common mode of evolution in flowering plants. This event provides the raw material for the divergence of function in homeologous genes, leading to phenotypic novelty that can contribute to the success of polyploids in nature or their selection for use in agriculture. Mounting evidence underlined the existence of homeologous expression biases in polyploid genomes; however, strategies to analyze such transcriptome regulation remained scarce. Important factors regarding homeologous expression biases remain to be explored, such as whether this phenomenon influences specific genes, how paralogs are affected by genome doubling, and what is the importance of the variability of homeologous expression bias to genotype differences. This study reports the expressed sequence tag assembly of the allopolyploid Coffea arabica and one of its direct ancestors, Coffea canephora. The assembly was used for the discovery of single nucleotide polymorphisms through the identification of high-quality discrepancies in overlapped expressed sequence tags and for gene expression information indirectly estimated by the transcript redundancy. Sequence diversity profiles were evaluated within C. arabica (Ca)and C. canephora (Cc)and used to deduce the transcript contribution of the Coffea eugenioides (Ce)ancestor. The assignment of the C. arabica haplotypes to the C. canephora (CaCc)or C. eugenioides (CaCe)ancestral genomes allowed us to analyze gene expression contributions of each subgenome in C. arabica. In silico data were validated by the quantitative polymerase chain reaction and allele-specific combination TaqMAMA-based method. The presence of differential expression of C. arabica homeologous genes and its implications in coffee gene expression, ontology, and physiology are discussed. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Oliveira Vidal, R. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Costa Mondego, J.M. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Pot, D. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Batista Ambrosio, D. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Carvalho Andrade, A. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Protasio Pereira, L.F. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Colombo, C.A. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Colombo, C.A. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Falsarella Carazzolle, M. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Guimara~Es Pereira, G.A. |
| 856 40 - ELECTRONIC LOCATION AND ACCESS | |
| Uniform Resource Identifier | <a href="https://drive.google.com/file/d/18uLxvb3_EZmNWvY0Muzm5vuQaJ9YiJsk/view?usp=drivesdk">https://drive.google.com/file/d/18uLxvb3_EZmNWvY0Muzm5vuQaJ9YiJsk/view?usp=drivesdk</a> |
| Public note | Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) | |
| Source of classification or shelving scheme | Clasificación local |
| Koha item type | Documentos solicitados |
| Lost status | Source of classification or shelving scheme | Damaged status | Not for loan | Collection | Home library | Current library | Shelving location | Date acquired | Total checkouts | Full call number | Date last seen | Price effective from | Koha item type |
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| Clasificación local | Ref1 | CICY | CICY | Documento préstamo interbibliotecario | 25.06.2025 | B-12351 | 25.06.2025 | 25.06.2025 | Documentos solicitados |