High-resolution insertion-site analysis by linear amplification-mediated PCR (LAM-PCR) (Record no. 50100)

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control field MX-MdCICY
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control field 20250625160141.0
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Transcribing agency CICY
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Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) B-15924
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Title High-resolution insertion-site analysis by linear amplification-mediated PCR (LAM-PCR)
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Volume/sequential designation Nature Methods, 4(5), p.1051-1057, 2007
520 3# - SUMMARY, ETC.
Summary, etc. Integrating vector systems used in clinical gene therapy have proven their therapeutic potential in the long-term correction of immunodeficiencies. The integration loci of such vectors in the cellular genome represent a molecular marker unique for each transduced cell and its clonal progeny. To gain insight into the physiology of gene-modified hematopoietic repopulation and vector-related influences on clonal contributions, we have previously introduced a technology-linear amplification-mediated (LAM)PCR-for detecting and sequencing unknown DNA flanking sequences down to the single cell level (Supplementary Note online). LAM-PCR analyses have enabled qualitative and quantitative measurements of the clonal kinetics of hematopoietic regeneration in gene transfer studies, and uncovered the clonal derivation of non-leukemogenic and leukemogenic insertional side effects in preclinical and clinical gene therapy studies. The reliability and robustness of this method results from the initial preamplification of the vector-genome junctions preceding nontarget DNA removal via magnetic selection. Subsequent steps are carried out on a semisolid streptavidin phase, including synthesis of double complementary strands, restriction digest, ligation of a linker cassette onto the genomic end of the fragment and exponential PCR(s)with vector- and linker cassette-specific primers. LAM-PCR can be adjusted to all unknown DNA sequences adjacent to a known DNA sequence. Here we describe the use of LAM-PCR analyses to identify 5' long terminal repeat (LTR)retroviral vector adjacent genomic sequences (Fig. 1 and Box 1).
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element DNA
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element MOLECULAR MARKER
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element RETROVIRUS VECTOR
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element STREPTAVIDIN
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Schmidt, M.
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Personal name Schwarzwaelder, K.
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Personal name Bartholomae, C.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Zaoui, K.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Ball, C.
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Personal name Pilz, I.
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Personal name Braun, S.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Braun, S.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Von Kalle, C.
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Uniform Resource Identifier <a href="https://drive.google.com/file/d/1YR75gpkSKlqOKg61v6GhkdcVpVxyjIqH/view?usp=drivesdk">https://drive.google.com/file/d/1YR75gpkSKlqOKg61v6GhkdcVpVxyjIqH/view?usp=drivesdk</a>
Public note Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx
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Source of classification or shelving scheme Clasificación local
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  Clasificación local     Ref1 CICY CICY Documento préstamo interbibliotecario 25.06.2025   B-15924 25.06.2025 25.06.2025 Documentos solicitados