Optimized DNA extraction and metagenomic sequencing of airborne microbial communities (Record no. 50298)

MARC details
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fixed length control field 02778nam a2200625Ia 4500
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control field MX-MdCICY
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control field 20250625160145.0
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Transcribing agency CICY
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) B-16123
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245 10 - TITLE STATEMENT
Title Optimized DNA extraction and metagenomic sequencing of airborne microbial communities
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Volume/sequential designation Nature Protocols, 10(5), p.768-779, 2015
520 3# - SUMMARY, ETC.
Summary, etc. Metagenomic sequencing has been widely used for the study of microbial communities from various environments such as soil, ocean, sediment and fresh water. Nonetheless, metagenomic sequencing of microbial communities in the air remains technically challenging, partly owing to the limited mass of collectable atmospheric particulate matter and the low biological content it contains. Here we present an optimized protocol for extracting up to tens of nanograms of airborne microbial genomic DNA from collected particulate matter. With an improved sequencing library preparation protocol, this quantity is sufficient for downstream applications, such as metagenomic sequencing for sampling various genes from the airborne microbial community. The described protocol takes ~ 12 h of bench time over 2-3 d, and it can be performed with standard molecular biology equipment in the laboratory. A modified version of this protocol may also be used for genomic DNA extraction from other environmental samples of limited mass or low biological content.
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Topical term or geographic name entry element AIR POLLUTION
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Topical term or geographic name entry element AIRBORNE MICROORGANISM
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Topical term or geographic name entry element ARTICLE
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Topical term or geographic name entry element CONTROLLED STUDY
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Topical term or geographic name entry element DNA BINDING
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Topical term or geographic name entry element DNA DETERMINATION
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Topical term or geographic name entry element DNA EXTRACTION
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Topical term or geographic name entry element DNA LIBRARY
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Topical term or geographic name entry element DNA SEQUENCE
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Topical term or geographic name entry element GENOME ANALYSIS
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Topical term or geographic name entry element METAGENOMICS
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Topical term or geographic name entry element MICROBIAL COMMUNITY
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Topical term or geographic name entry element NONHUMAN
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Topical term or geographic name entry element PARTICULATE MATTER
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Topical term or geographic name entry element PRIORITY JOURNAL
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Topical term or geographic name entry element PRIORITY JOURNAL
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Topical term or geographic name entry element SEQUENCE ANALYSIS
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Topical term or geographic name entry element BIOCHEMISTRY
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Topical term or geographic name entry element CHINA
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Topical term or geographic name entry element DEVICES
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Topical term or geographic name entry element DNA SEQUENCE
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Topical term or geographic name entry element ENVIRONMENTAL MONITORING
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Topical term or geographic name entry element EQUIPMENT DESIGN
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Topical term or geographic name entry element GENETICS
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Topical term or geographic name entry element ISOLATION AND PURIFICATION
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Topical term or geographic name entry element METAGENOME
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Topical term or geographic name entry element MICROBIAL CONSORTIUM
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Topical term or geographic name entry element MICROBIOLOGY
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Topical term or geographic name entry element PROCEDURES
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Topical term or geographic name entry element QUALITY CONTROL
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Topical term or geographic name entry element WORKFLOW
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Personal name Jiang, W.
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Personal name Liang, P.
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Personal name Wang, B.
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Personal name Fang, J.
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Personal name Lang, J.
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Personal name Tian, G.
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Personal name Jiang, J.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Jiang, J.
856 40 - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier <a href="https://drive.google.com/file/d/1gbnvTYtocwx4ee4aF3ZyjdzvqgPOnvjV/view?usp=drivesdk">https://drive.google.com/file/d/1gbnvTYtocwx4ee4aF3ZyjdzvqgPOnvjV/view?usp=drivesdk</a>
Public note Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx
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Source of classification or shelving scheme Clasificación local
Koha item type Documentos solicitados
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  Clasificación local     Ref1 CICY CICY Documento préstamo interbibliotecario 25.06.2025   B-16123 25.06.2025 25.06.2025 Documentos solicitados