Prequels to Synthetic Biology: From Candidate Gene Identification and Validation to Enzyme Subcellular Localization in Plant and Yeast Cells (Record no. 50333)

MARC details
000 -LEADER
fixed length control field 03224nam a2200433Ia 4500
003 - CONTROL NUMBER IDENTIFIER
control field MX-MdCICY
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20250625160146.0
040 ## - CATALOGING SOURCE
Transcribing agency CICY
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) B-16159
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 250602s9999 xx |||||s2 |||| ||und|d
245 10 - TITLE STATEMENT
Title Prequels to Synthetic Biology: From Candidate Gene Identification and Validation to Enzyme Subcellular Localization in Plant and Yeast Cells
490 0# - SERIES STATEMENT
Volume/sequential designation Methods in Enzymology, p.167-206, 2016
520 3# - SUMMARY, ETC.
Summary, etc. Natural compounds extracted from microorganisms or plants constitute an inexhaustible source of valuable molecules whose supply can be potentially challenged by limitations in biological sourcing. The recent progress in synthetic biology combined to the increasing access to extensive transcriptomics and genomics data now provide new alternatives to produce these molecules by transferring their whole biosynthetic pathway in heterologous production platforms such as yeasts or bacteria. While the generation of high titer producing strains remains per se an arduous field of investigation, elucidation of the biosynthetic pathways as well as characterization of their complex subcellular organization are essential prequels to the efficient development of such bioengineering approaches. Using examples from plants and yeasts as a framework, we describe potent methods to rationalize the study of partially characterized pathways, including the basics of computational applications to identify candidate genes in transcriptomics data and the validation of their function by an improved procedure of virus-induced gene silencing mediated by direct DNA transfer to get around possible resistance to Agrobacterium-delivery of viral vectors. To identify potential alterations of biosynthetic fluxes resulting from enzyme mislocalizations in reconstituted pathways, we also detail protocols aiming at characterizing subcellular localizations of protein in plant cells by expression of fluorescent protein fusions through biolistic-mediated transient transformation, and localization of transferred enzymes in yeast using similar fluorescence procedures. Albeit initially developed for the Madagascar periwinkle, these methods may be applied to other plant species or organisms in order to establish synthetic biology platform.
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element BIOLISTIC
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element CANDIDATE GENE IDENTIFICATION
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element CATHARANTHUS ROSEUS
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element FLUORESCENT PROTEIN FUSIONS
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element SPECIALIZED METABOLISM
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element SUBCELLULAR LOCALIZATION
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element SYNTHETIC BIOLOGY
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element VIRUS-INDUCED GENE SILENCING
650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element YEAST BIOENGINEERING
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Foureau, E.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Carqueijeiro, I.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Dugé De Bernonville, T.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Melin, C.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Lafontaine, F.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Besseau, S.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Lanoue, A.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Lanoue, A.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Oudin, A.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Glévarec, G.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Clastre, M.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name St-Pierre, B.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Giglioli-Guivarc'H, N.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Courdavault, V.
856 40 - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier <a href="https://drive.google.com/file/d/1elKIeFesId-K8YA9I96j0qSCV8I_nFZQ/view?usp=drivesdk">https://drive.google.com/file/d/1elKIeFesId-K8YA9I96j0qSCV8I_nFZQ/view?usp=drivesdk</a>
Public note Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Source of classification or shelving scheme Clasificación local
Koha item type Documentos solicitados
Holdings
Lost status Source of classification or shelving scheme Damaged status Not for loan Collection Home library Current library Shelving location Date acquired Total checkouts Full call number Date last seen Price effective from Koha item type
  Clasificación local     Ref1 CICY CICY Documento préstamo interbibliotecario 25.06.2025   B-16159 25.06.2025 25.06.2025 Documentos solicitados