Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening (Record no. 50796)

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fixed length control field 02299nam a2200409Ia 4500
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control field MX-MdCICY
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control field 20250625160155.0
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Transcribing agency CICY
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Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) B-16626
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Title Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening
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Volume/sequential designation Nature Protocols, 12(4), p.828-863, 2017
520 3# - SUMMARY, ETC.
Summary, etc. Forward genetic screens are powerful tools for the unbiased discovery and functional characterization of specific genetic elements associated with a phenotype of interest. Recently, the RNA-guided endonuclease Cas9 from the microbial CRISPR (clustered regularly interspaced short palindromic repeats)immune system has been adapted for genome-scale screening by combining Cas9 with pooled guide RNA libraries. Here we describe a protocol for genome-scale knockout and transcriptional activation screening using the CRISPR-Cas9 system. Custom- or ready-made guide RNA libraries are constructed and packaged into lentiviral vectors for delivery into cells for screening. As each screen is unique, we provide guidelines for determining screening parameters and maintaining sufficient coverage. To validate candidate genes identified by the screen, we further describe strategies for confirming the screening phenotype, as well as genetic perturbation, through analysis of indel rate and transcriptional activation. Beginning with library design, a genome-scale screen can be completed in 9-15 weeks, followed by 4-5 weeks of validation.
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Topical term or geographic name entry element ANIMAL
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Topical term or geographic name entry element CRISPR CAS SYSTEM
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Topical term or geographic name entry element GENE INACTIVATION
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Topical term or geographic name entry element GENE LIBRARY
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Topical term or geographic name entry element GENE VECTOR
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Topical term or geographic name entry element GENETICS
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Topical term or geographic name entry element GENOMICS
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Topical term or geographic name entry element HUMAN
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Topical term or geographic name entry element LENTIVIRINAE
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Topical term or geographic name entry element MOUSE
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Topical term or geographic name entry element PHENOTYPE
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Topical term or geographic name entry element PROCEDURES
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Topical term or geographic name entry element TRANSCRIPTION INITIATION
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Personal name Joung, J.
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Personal name Konermann, S.
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Personal name Gootenberg, J.S.
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Personal name Abudayyeh, O.O.
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Personal name Platt, R.J.
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Personal name Brigham, M.D.
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Personal name Sanjana, N.E.
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Personal name Sanjana, N.E.
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Uniform Resource Identifier <a href="https://drive.google.com/file/d/1hZCInwhG_2GBbuPvAaBTzOJQD0wNJbKO/view?usp=drivesdk">https://drive.google.com/file/d/1hZCInwhG_2GBbuPvAaBTzOJQD0wNJbKO/view?usp=drivesdk</a>
Public note Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx
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Source of classification or shelving scheme Clasificación local
Koha item type Documentos solicitados
Holdings
Lost status Source of classification or shelving scheme Damaged status Not for loan Collection Home library Current library Shelving location Date acquired Total checkouts Full call number Date last seen Price effective from Koha item type
  Clasificación local     Ref1 CICY CICY Documento préstamo interbibliotecario 25.06.2025   B-16626 25.06.2025 25.06.2025 Documentos solicitados