Comparison of genotyping by sequencing and microsatellite markers for unravelling population structure in the clonal fungus Verticillium dahliae (Record no. 50956)
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| 000 -LEADER | |
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| fixed length control field | 02743nam a2200301Ia 4500 |
| 003 - CONTROL NUMBER IDENTIFIER | |
| control field | MX-MdCICY |
| 005 - DATE AND TIME OF LATEST TRANSACTION | |
| control field | 20250625160158.0 |
| 040 ## - CATALOGING SOURCE | |
| Transcribing agency | CICY |
| 090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN) | |
| Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) | B-16789 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION | |
| fixed length control field | 250602s9999 xx |||||s2 |||| ||und|d |
| 245 10 - TITLE STATEMENT | |
| Title | Comparison of genotyping by sequencing and microsatellite markers for unravelling population structure in the clonal fungus Verticillium dahliae |
| 490 0# - SERIES STATEMENT | |
| Volume/sequential designation | Plant Pathology, 67(1), p.76-86, 2018 |
| 520 3# - SUMMARY, ETC. | |
| Summary, etc. | Microsatellite genotyping of a large sample of isolates of Verticillium dahliae from diverse locations recently identified seven distinct genotypic clusters. However, these clusters were not put in the context of phenotypes known to be correlated with clonal lineages in V. dahliae. The objective of this study was to compare clusters defined by microsatellite markers with clonal lineages defined by single-nucleotide polymorphisms (SNPs)and vegetative compatibility groups (VCGs). Genotyping isolates known to belong to specific clonal lineages (based on SNPs)with microsatellite markers determined the correspondence of clusters and lineages. All but one cluster corresponded to a known clonal lineage, allowing analysis of correlations of phenotypes with microsatellite genotypes from other studies. As shown previously, most race 1 isolates are in lineage 2A, and most isolates with the defoliating pathotype are in lineage 1A. Phylogenetic incompatibility was used to test for recombination or homoplasy caused by hypervariable microsatellite loci; incompatibility was highly correlated with the number of alleles per locus, suggesting that homoplasy caused by parallel evolution of microsatellite alleles is the cause of incompatibility. Microsatellite genotyping of lineage 1A isolates from cotton and olive in Spain over a 29-year period revealed remarkably little variation; these markers did not mutate enough to provide insight on the spatial and temporal expansion of this clone. Overall, this study showed that microsatellite genotyping can be used to identify clonal lineages in V. dahliae, which has predictive power for inferring phenotypes of phytopathological relevance such as race and pathotype. |
| 650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name entry element | CLONAL LINEAGE |
| 650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name entry element | GENOTYPING BY SEQUENCING |
| 650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name entry element | MICROSATELLITE |
| 650 14 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name entry element | VERTICILLIUM DAHLIAE |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Rafiei, V. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Banihashemi, Z. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Jiménez-Díaz, R.M. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Navas-Cortés, J.A. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Landa, B.B. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Jiménez-Gasco, M.M. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Turgeon, B.G. |
| 700 12 - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Turgeon, B.G. |
| 856 40 - ELECTRONIC LOCATION AND ACCESS | |
| Uniform Resource Identifier | <a href="https://drive.google.com/file/d/1ikTCyF-8p3bgY4zeQTLZsxdqcdyuyC03/view?usp=drivesdk">https://drive.google.com/file/d/1ikTCyF-8p3bgY4zeQTLZsxdqcdyuyC03/view?usp=drivesdk</a> |
| Public note | Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) | |
| Source of classification or shelving scheme | Clasificación local |
| Koha item type | Documentos solicitados |
| Lost status | Source of classification or shelving scheme | Damaged status | Not for loan | Collection | Home library | Current library | Shelving location | Date acquired | Total checkouts | Full call number | Date last seen | Price effective from | Koha item type |
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| Clasificación local | Ref1 | CICY | CICY | Documento préstamo interbibliotecario | 25.06.2025 | B-16789 | 25.06.2025 | 25.06.2025 | Documentos solicitados |