Large-scale gene function analysis with the PANTHER classification system (Record no. 51507)

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control field MX-MdCICY
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control field 20250625160209.0
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Transcribing agency CICY
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Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) B-17344
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Title Large-scale gene function analysis with the PANTHER classification system
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Volume/sequential designation Nature Protocols, 8(8), p.1551-1566, 2013
520 3# - SUMMARY, ETC.
Summary, etc. The pantHer(protein annotation through evolutionary relationship)classification system (http://www.pantherdb.org/)is a comprehensive system that combines gene function, ontology, pathways and statistical analysis tools that enable biologists to analyze large-scale, genome-wide data from sequencing, proteomics or gene expression experiments. the system is built with 82 complete genomes organized into gene families and subfamilies, and their evolutionary relationships are captured in phylogenetic trees, multiple sequence alignments and statistical models (hidden Markov models or HMMs). Genes are classified according to their function in several different ways: families and subfamilies are annotated with ontology terms (Gene ontology (Go)and pantHerprotein class), and sequences are assigned to pantHerpathways. the pantHerwebsite includes a suite of tools that enable users to browse and query gene functions, and to analyze large-scale experimental data with a number of statistical tests. It is widely used by bench scientists, bioinformaticians, computer scientists and systems biologists. In the 2013 release of pantHer(v.8.0), in addition to an update of the data content, we redesigned the website interface to improve both user experience and the system's analytical capability. this protocol provides a detailed description of how to analyze genome-wide experimental data with the pantHerclassification system.
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Topical term or geographic name entry element DATABASES, PROTEIN
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Topical term or geographic name entry element INTERNET
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Topical term or geographic name entry element MOLECULAR SEQUENCE
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Topical term or geographic name entry element ANNOTATION
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Topical term or geographic name entry element PHYLOGENY
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Topical term or geographic name entry element PROTEINS
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Topical term or geographic name entry element SOFTWARE
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Topical term or geographic name entry element STATISTICS, NONPARAMETRIC
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Mi, H.
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Personal name Muruganujan, A.
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Personal name Casagrande, J. T.
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Thomas, P. D.
856 40 - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier <a href="https://drive.google.com/file/d/1EmOpRrr50w7jhB20fZFFPscgA48Oiq9b/view?usp=drivesdk">https://drive.google.com/file/d/1EmOpRrr50w7jhB20fZFFPscgA48Oiq9b/view?usp=drivesdk</a>
Public note Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx
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Source of classification or shelving scheme Clasificación local
Koha item type Documentos solicitados
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  Clasificación local     Ref1 CICY CICY Documento préstamo interbibliotecario 25.06.2025   B-17344 25.06.2025 25.06.2025 Documentos solicitados