An atlas of wheat epigenetic regulatory elements reveals subgenome divergence in the regulation of development and stress responses (Record no. 52915)

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control field MX-MdCICY
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control field 20250625162418.0
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Transcribing agency CICY
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Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) B-18769
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Title An atlas of wheat epigenetic regulatory elements reveals subgenome divergence in the regulation of development and stress responses
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Volume/sequential designation The Plant Cell, 33, p.865-881, 2021
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Summary, etc. Wheat (Triticum aestivum)has a large allohexaploid genome. Subgenome-divergent regulation contributed to genome plasticity and the domestication of polyploid wheat. However, the specificity encoded in the wheat genome determining subgenome-divergent spatio-temporal regulation has been largely unexplored. The considerable size and complexity of the genome are major obstacles to dissecting the regulatory specificity. Here, we compared the epigenomes and transcriptomes from a large set of samples under diverse developmental and environmental conditions. Thousands of distal epigenetic regulatory elements (distal-epiREs)were specifically linked to their target promoters with coordinated epigenomic changes. We revealed that subgenome-divergent activity of homologous regulatory elements is affected by specific epigenetic signatures. Subgenome-divergent epiRE regulation of tissue specificity is associated with dynamic modulation of H3K27me3 mediated by Polycomb complex and demethylases. Furthermore, quantitative epigenomic approaches detected key stress responsive cis- and trans-acting factors validated by DNA Affinity Purification and sequencing, and demonstrated the coordinated interplay between epiRE sequence contexts, epigenetic factors, and transcription factors in regulating subgenome divergent transcriptional responses to external changes. Together, this study provides a wealth of resources for elucidating the epiRE regulomics and subgenome-divergent regulation in hexaploid wheat, and gives new clues for interpreting genetic and epigenetic interplay in regulating the benefits of polyploid wheat.
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Personal name Meiyue Wang
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Personal name Zijuan Li
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Personal name Yu'E Zhang
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Yuyun Zhang
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Personal name Yilin Xie
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Luhuan Ye
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Yili Zhuang
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Yili Zhuang
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Fei Zhao
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Personal name Jingyu Guo
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Wan Teng
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Personal name Wenli Zhang
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Personal name Yiping Tong
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Personal name Yongbiao Xue
700 12 - ADDED ENTRY--PERSONAL NAME
Personal name Yijing Zhang
856 40 - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier <a href="https://drive.google.com/file/d/1tn5awcy6dIXKOkN79pRdz6kgOwtd84lu/view?usp=drivesdk">https://drive.google.com/file/d/1tn5awcy6dIXKOkN79pRdz6kgOwtd84lu/view?usp=drivesdk</a>
Public note Para ver el documento ingresa a Google con tu cuenta: @cicy.edu.mx
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Source of classification or shelving scheme Clasificación local
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  Clasificación local     Ref1 CICY CICY Documento préstamo interbibliotecario 25.06.2025   B-18769 25.06.2025 25.06.2025 Documentos solicitados