000 03507nam a22004815i 4500
001 978-1-4020-3587-6
003 DE-He213
005 20251006084457.0
007 cr nn 008mamaa
008 100301s2006 ne | s |||| 0|eng d
020 _a9781402035876
020 _a99781402035876
024 7 _a10.1007/1-4020-3587-X
_2doi
082 0 4 _a541.0285
_223
100 1 _aBecker, Oren M.
_eauthor.
245 1 2 _aA Guide to Biomolecular Simulations
_h[electronic resource] /
_cby Oren M. Becker, Martin Karplus.
264 1 _aDordrecht :
_bSpringer Netherlands,
_c2006.
300 _aIX, 203 p.
_bonline resource.
336 _atext
_btxt
_2rdacontent
337 _acomputer
_bc
_2rdamedia
338 _aonline resource
_bcr
_2rdacarrier
347 _atext file
_bPDF
_2rda
490 1 _aFocus on Structural Biology,
_x1571-4853 ;
_v4
505 0 _aIntroduction: Note to the Student -- Introduction: Note to the Instructor -- Introduction: UNIX -- Introduction: CHARMM Primer -- Introduction: CHARMM Template Files -- Molecular Visualization -- Energy and Minimization -- Minimization and Analysis -- Conformational Analysis -- Basic Molecular Dynamics in Vacuum and in Solution -- Molecular Dynamics and Analysis -- Ligand Dynamics in Myoglobin -- Normal Mode Analysis -- Free Energy Calculations -- Minimum Energy Paths and Transition States -- Multiple Copy Simultaneous Search -- Hemoglobin Cooperativity: the T-R Transition.
520 _aMolecular dynamics simulations have become instrumental in replacing our view of proteins as relatively rigid structures with the realization that they were dynamic systems, whose internal motions play a functional role. Over the years, such simulations have become a central part of biophysics. Applications of molecular dynamics in biophysics range over many areas. They are used in the structure determination of macromolecules with x-ray and NMR data, the modelling of unknown structures from their sequence, the study of enzyme mechanisms, the estimation of ligand-binding free energies, the evaluation of the role of conformational change in protein function, and drug design for targets of known structures. The widespread application of molecular dynamics and related methodologies suggests that it would be useful to have available an introductory self-contained course by which students with a relatively limited background in chemistry, biology and computer literacy, can learn the fundamentals of the field. This Guide to Biomolecular Simulations tries to fill this need. The Guide consists of six chapters which provide the fundamentals of the field and six chapters which introduce the reader to more specialized but important applications of the methodology.
650 0 _aCHEMISTRY.
650 0 _aBIOLOGY
_xDATA PROCESSING.
650 0 _aBIOMEDICAL ENGINEERING.
650 1 4 _aCHEMISTRY.
650 2 4 _aCOMPUTER APPLICATIONS IN CHEMISTRY.
650 2 4 _aCOMPUTER APPL. IN LIFE SCIENCES.
650 2 4 _aBIOPHYSICS/BIOMEDICAL PHYSICS.
650 2 4 _aTHEORETICAL AND COMPUTATIONAL CHEMISTRY.
700 1 _aKarplus, Martin.
_eauthor.
710 2 _aSpringerLink (Online service)
773 0 _tSpringer eBooks
776 0 8 _iPrinted edition:
_z9781402035869
830 0 _aFocus on Structural Biology,
_x1571-4853 ;
_v4
856 4 0 _uhttp://dx.doi.org/10.1007/1-4020-3587-X
_zVer el texto completo en las instalaciones del CICY
912 _aZDB-2-CMS
942 _2ddc
_cER
999 _c60511
_d60511